If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ), 'gf_id' => 'HOM05D000629', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000629' ), 'data_identifier' => 'HOM05D000629', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000629', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '905', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28910' => 'bna', 'A02p02840' => 'bna', 'A02p16300' => 'bna', 'A02p16310' => 'bna', 'A02p16340' => 'bna', 'A03p06900' => 'bna', 'A03p66060' => 'bna', 'A05p16720' => 'bna', 'A05p16730' => 'bna', 'A06p07090' => 'bna', 'A07p13400' => 'bna', 'A07p19510' => 'bna', 'A07p31240' => 'bna', 'A07p31250' => 'bna', 'A07p36470' => 'bna', 'A09p17860' => 'bna', 'A09p40670' => 'bna', 'Aa31LG11G14500' => 'aar', 'Aa31LG2G10330' => 'aar', 'Aa31LG4G10820' => 'aar', 'Aa31LG4G10830' => 'aar', 'Aa31LG4G10840' => 'aar', 'Aa31LG4G10850' => 'aar', 'Aa31LG4G10860' => 'aar', 'Aa31LG4G5240' => 'aar', 'Aa31LG7G7960' => 'aar', 'Aa31LG7G7970' => 'aar', 'Aa31LG9G1560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.209' => 'aag', 'Actinidia04057' => 'ach', 'Actinidia04058' => 'ach', 'Actinidia08190' => 'ach', 'Actinidia08200' => 'ach', 'Actinidia08201' => 'ach', 'Actinidia08202' => 'ach', 'Actinidia09930' => 'ach', 'Actinidia10055' => 'ach', 'Actinidia37689' => 'ach', 'Ah.02g131710' => 'amhyb', 'Ah.03g132080' => 'amhyb', 'AL1G20990' => 'aly', 'AL1G21230' => 'aly', 'AL1G36720' => 'aly', 'AL1G36730' => 'aly', 'AL1G36780' => 'aly', 'AL1G37820' => 'aly', 'AL1G37850' => 'aly', 'AL1G38020' => 'aly', 'AL1G38030' => 'aly', 'AL1G38040' => 'aly', 'AL1G38050' => 'aly', 'AL1G38070' => 'aly', 'AL1G38090' => 'aly', 'AL1G38110' => 'aly', 'AL1G38120' => 'aly', 'AL1G38130' => 'aly', 'AL1G38200' => 'aly', 'AL1G59330' => 'aly', 'AL2G16860' => 'aly', 'AL2G29270' => 'aly', 'AL2G29300' => 'aly', 'AL3G10910' => 'aly', 'AL3G41480' => 'aly', 'AL3G41490' => 'aly', 'AL3G41560' => 'aly', 'AL6G25840' => 'aly', 'AL6G25850' => 'aly', 'AL6G25860' => 'aly', 'AL6G41620' => 'aly', 'Aqoxy3G00865' => 'aox', 'Aqoxy3G03153' => 'aox', 'Aqoxy3G03154' => 'aox', 'Aqoxy3G03155' => 'aox', 'Aqoxy3G03157' => 'aox', 'Aqoxy3G03158' => 'aox', 'Aqoxy3G03164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U4MMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38NBAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EE6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91F6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IC2T98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5IUDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MG25IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4NCVL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFL5QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGZ8FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URPE6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7PDQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU7W7L' => 'arhy', 'AT1G10250' => 'ath', 'AT1G10450' => 'ath', 'AT1G23810' => 'ath', 'AT1G24060' => 'ath', 'AT1G24190' => 'ath', 'AT1G24200' => 'ath', 'AT1G24210' => 'ath', 'AT1G24220' => 'ath', 'AT1G24230' => 'ath', 'AT1G24250' => 'ath', 'AT1G27220' => 'ath', 'AT1G27240' => 'ath', 'AT1G27250' => 'ath', 'AT1G27260' => 'ath', 'AT1G27270' => 'ath', 'AT1G27280' => 'ath', 'AT1G59890' => 'ath', 'AT1G70030' => 'ath', 'AT1G70060' => 'ath', 'AT3G01320' => 'ath', 'AT5G15020' => 'ath', 'AT5G15025' => 'ath', 'AT5G15030' => 'ath', 'AT5G15040' => 'ath', 'AT5G35610' => 'ath', 'ATR0789G120' => 'atr', 'ATR1101G039' => 'atr', 'Atru.chr11.1925' => 'acertr', 'Atru.chr4.1678' => 'acertr', 'Atru.chr4.1679' => 'acertr', 'Atru.chr4.1680' => 'acertr', 'Atru.chr8.2428' => 'acertr', 'AUR62014568' => 'cqu', 'AUR62026328' => 'cqu', 'AUR62026526' => 'cqu', 'AUR62039393' => 'cqu', 'BcaB01g05087' => 'bca', 'BcaB03g14781' => 'bca', 'BcaB03g14783' => 'bca', 'BcaB03g15528' => 'bca', 'BcaB03g15529' => 'bca', 'BcaB04g20237' => 'bca', 'BcaB05g24515' => 'bca', 'BcaB05g24516' => 'bca', 'BcaB05g24517' => 'bca', 'BcaB05g24518' => 'bca', 'BcaB05g24519' => 'bca', 'BcaB05g24520' => 'bca', 'BcaB07g31188' => 'bca', 'BcaB07g32399' => 'bca', 'BcaB08g36932' => 'bca', 'BcaB08g36933' => 'bca', 'BcaC02g10673' => 'bca', 'BcaC02g10684' => 'bca', 'BcaC03g13435' => 'bca', 'BcaC03g15153' => 'bca', 'BcaC04g22197' => 'bca', 'BcaC05g24883' => 'bca', 'BcaC05g24928' => 'bca', 'BcaC05g25349' => 'bca', 'BcaC05g26327' => 'bca', 'BcaC06g31798' => 'bca', 'BcaC06g31799' => 'bca', 'BcaC06g35081' => 'bca', 'BcaC08g44274' => 'bca', 'BcaC08g45844' => 'bca', 'BcaC08g45845' => 'bca', 'BcaC08g46454' => 'bca', 'BcaC08g46455' => 'bca', 'BcaC09g47650' => 'bca', 'BcaC09g47651' => 'bca', 'BcaC09g47668' => 'bca', 'BcaC09g49452' => 'bca', 'BcaNung03336' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00340' => 'bna', 'BolC1t03619H' => 'bol', 'BolC1t05513H' => 'bol', 'BolC1t05951H' => 'bol', 'BolC2t06677H' => 'bol', 'BolC2t08780H' => 'bol', 'BolC2t08782H' => 'bol', 'BolC2t08783H' => 'bol', 'BolC2t08785H' => 'bol', 'BolC3t13287H' => 'bol', 'BolC4t24149H' => 'bol', 'BolC5t29610H' => 'bol', 'BolC5t31041H' => 'bol', 'BolC6t36894H' => 'bol', 'BolC6t38755H' => 'bol', 'BolC6t38756H' => 'bol', 'BolC6t39461H' => 'bol', 'BolC6t39465H' => 'bol', 'BolC7t42522H' => 'bol', 'BolC9t55134H' => 'bol', 'BolC9t59052H' => 'bol', 'BolC9t59054H' => 'bol', 'BolC9t59055H' => 'bol', 'BolC9t59056H' => 'bol', 'BolC9t59057H' => 'bol', 'BraA01t03017Z' => 'bra', 'BraA01t04659Z' => 'bra', 'BraA02t05257Z' => 'bra', 'BraA02t06688Z' => 'bra', 'BraA02t06689Z' => 'bra', 'BraA02t06691Z' => 'bra', 'BraA03t10012Z' => 'bra', 'BraA03t15661Z' => 'bra', 'BraA05t20576Z' => 'bra', 'BraA06t23924Z' => 'bra', 'BraA07t29112Z' => 'bra', 'BraA07t29657Z' => 'bra', 'BraA07t30756Z' => 'bra', 'BraA07t30758Z' => 'bra', 'BraA07t30759Z' => 'bra', 'BraA07t31218Z' => 'bra', 'BraA09t37419Z' => 'bra', 'BraA09t39561Z' => 'bra', 'C01p36580' => 'bna', 'C02p07460' => 'bna', 'C02p27200' => 'bna', 'C02p27220' => 'bna', 'C02p27240' => 'bna', 'C02p27260' => 'bna', 'C02p27270' => 'bna', 'C03p07890' => 'bna', 'C04p26540' => 'bna', 'C05p08580' => 'bna', 'C05p23390' => 'bna', 'C05p51410' => 'bna', 'C06p16950' => 'bna', 'C06p36350' => 'bna', 'C06p36360' => 'bna', 'C06p43890' => 'bna', 'C06p43930' => 'bna', 'C07p20030' => 'bna', 'C09p22200' => 'bna', 'C09p62110' => 'bna', 'C09p62150' => 'bna', 'C09p62160' => 'bna', 'C09p62170' => 'bna', 'CAN.G1128.14' => 'can', 'CAN.G1206.1' => 'can', 'CAN.G175.22' => 'can', 'CAN.G206.73' => 'can', 'CAN.G206.74' => 'can', 'CAN.G206.75' => 'can', 'CAN.G206.76' => 'can', 'CAN.G206.78' => 'can', 'CAN.G361.2' => 'can', 'CAN.G361.3' => 'can', 'CAN.G549.4' => 'can', 'CAN.G720.6' => 'can', 'CAN.G720.7' => 'can', 'CAN.G954.2' => 'can', 'CAN.G970.19' => 'can', 'CANSAT01G0613' => 'cansat', 'CANSAT35G1875' => 'cansat', 'CARHR010590' => 'chi', 'CARHR024570' => 'chi', 'CARHR024580' => 'chi', 'CARHR024590' => 'chi', 'CARHR024600' => 'chi', 'CARHR024610' => 'chi', 'CARHR053200' => 'chi', 'CARHR063110' => 'chi', 'CARHR063120' => 'chi', 'CARHR063160' => 'chi', 'CARHR075690' => 'chi', 'CARHR198270' => 'chi', 'CARHR198280' => 'chi', 'CARHR198290' => 'chi', 'CARHR253970' => 'chi', 'CARHR263620' => 'chi', 'Carub.0001s0989' => 'cru', 'Carub.0001s2348' => 'cru', 'Carub.0001s2349' => 'cru', 'Carub.0001s2368' => 'cru', 'Carub.0001s2369' => 'cru', 'Carub.0001s2370' => 'cru', 'Carub.0001s2371' => 'cru', 'Carub.0001s2372' => 'cru', 'Carub.0001s2373' => 'cru', 'Carub.0001s2374' => 'cru', 'Carub.0002s0538' => 'cru', 'Carub.0002s1671' => 'cru', 'Carub.0002s1673' => 'cru', 'Carub.0003s0081' => 'cru', 'Carub.0006s1318' => 'cru', 'Carub.0006s1319' => 'cru', 'Carub.0006s1320' => 'cru', 'Carub.0006s1321' => 'cru', 'Carub.0006s2752' => 'cru', 'Carub.0006s2777' => 'cru', 'Carub.0006s2778' => 'cru', 'Carub.0007s3135' => 'cru', 'Carub.0350s0001' => 'cru', 'Ca_04238_v3' => 'car', 'Ca_04640_v3' => 'car', 'Ca_04641_v3' => 'car', 'Ca_26197_v3' => 'car', 'CBR_g20366' => 'cbr', 'Cc07_g02780' => 'ccan', 'Cc11_g13980' => 'ccan', 'CDE04G0561' => 'cde', 'CDE04G1724' => 'cde', 'CDE06G1214' => 'cde', 'CDE06G1863' => 'cde', 'CDE09G0081' => 'cde', 'Cfa007484' => 'cfa', 'Cfa009083' => 'cfa', 'Cfa014909' => 'cfa', 'Cfa022504' => 'cfa', 'Ciclev10007107m.g' => 'ccl', 'Ciclev10010908m.g' => 'ccl', 'Ciclev10030507m.g' => 'ccl', 'CiPaw.03G032900' => 'cil', 'CiPaw.04G021700' => 'cil', 'CiPaw.05G144300' => 'cil', 'CiPaw.06G077100' => 'cil', 'CiPaw.11G033700' => 'cil', 'ClCG01G004300' => 'cla', 'ClCG05G024900' => 'cla', 'ClCG09G022170' => 'cla', 'COL.COLO4_16853' => 'col', 'COL.COLO4_29721' => 'col', 'COL.COLO4_31056' => 'col', 'COL.COLO4_36271' => 'col', 'COL.COLO4_36272' => 'col', 'COL.COLO4_36273' => 'col', 'COL.COLO4_37017' => 'col', 'Cpa.g.c28922' => 'cpa', 'Cpa.g.c40190' => 'cpa', 'Cpa.g.c42085' => 'cpa', 'Cpa.g.sc5.318' => 'cpa', 'Cpa.g.sc83.5' => 'cpa', 'Cpa.g.sc83.8' => 'cpa', 'Cpa.g.sc83.9' => 'cpa', 'Cre03.g180800' => 'cre', 'CsaV3_5G025460' => 'csa', 'CsaV3_5G032000' => 'csa', 'CSS0002729' => 'camsi', 'CSS0004637' => 'camsi', 'CSS0005583' => 'camsi', 'CSS0009731' => 'camsi', 'CSS0016092' => 'camsi', 'CSS0016443' => 'camsi', 'CSS0019274' => 'camsi', 'CSS0035286' => 'camsi', 'CSS0037469' => 'camsi', 'CSS0044507' => 'camsi', 'DCAR_001682' => 'dca', 'DCAR_006713' => 'dca', 'DCAR_007116' => 'dca', 'DCAR_011183' => 'dca', 'DCAR_016517' => 'dca', 'DCAR_016520' => 'dca', 'DCAR_025360' => 'dca', 'DCAR_026572' => 'dca', 'Dinv13124' => 'din', 'Dinv21339' => 'din', 'Dinv24925' => 'din', 'Dinv31134' => 'din', 'Dinv31135' => 'din', 'Dinv33684' => 'din', 'Dinv35005' => 'din', 'Duzib187G0377' => 'dzi', 'Duzib248G1530' => 'dzi', 'Duzib251G0389' => 'dzi', 'Duzib264G1131' => 'dzi', 'Duzib268G1764' => 'dzi', 'ECA232G2758' => 'eca', 'ECA234G2364' => 'eca', 'ECA238G1737' => 'eca', 'ECA246G0126' => 'eca', 'ECA246G4457' => 'eca', 'EL10Ac2g04646' => 'bvu', 'EL10Ac6g13094' => 'bvu', 'Eucgr.B03381' => 'egr', 'Eucgr.F02735' => 'egr', 'Eucgr.G00402' => 'egr', 'Eucgr.I01884' => 'egr', 'Eucgr.J02161' => 'egr', 'FAN01G1200' => 'fan', 'FAN02G0612' => 'fan', 'FAN02G2198' => 'fan', 'FAN02G3456' => 'fan', 'FAN03G2648' => 'fan', 'FAN03G3229' => 'fan', 'FAN04G2607' => 'fan', 'FAN04G3120' => 'fan', 'FAN05G2798' => 'fan', 'FAN05G4494' => 'fan', 'FAN06G2347' => 'fan', 'FAN07G2349' => 'fan', 'FAN08G0494' => 'fan', 'FAN08G1271' => 'fan', 'FAN09G1195' => 'fan', 'FAN10G3040' => 'fan', 'FAN12G3339' => 'fan', 'FAN14G4427' => 'fan', 'FAN17G1325' => 'fan', 'FAN18G1989' => 'fan', 'FAN18G3419' => 'fan', 'FAN21G1441' => 'fan', 'FAN22G2288' => 'fan', 'FAN25G2114' => 'fan', 'FvH4_3g01921' => 'fve', 'FvH4_3g01930' => 'fve', 'FvH4_4g35300' => 'fve', 'FvH4_5g11770' => 'fve', 'FvH4_5g16201' => 'fve', 'FvH4_5g22630' => 'fve', 'FvH4_6g49770' => 'fve', 'FvH4_6g49780' => 'fve', 'FvH4_6g49790' => 'fve', 'FvH4_7g18951' => 'fve', 'Glyma.01G038250' => 'gma', 'Glyma.01G038300' => 'gma', 'Glyma.02G026700' => 'gma', 'Glyma.08G292900' => 'gma', 'Glyma.08G293000' => 'gma', 'Glyma.08G293050' => 'gma', 'Glyma.08G293100' => 'gma', 'Glyma.13G067600' => 'gma', 'Glyma.13G067800' => 'gma', 'Glyma.18G130300' => 'gma', 'Glyma.18G130400' => 'gma', 'Glyma.19G016300' => 'gma', 'Gohir.A03G144200' => 'ghi', 'Gohir.A05G362400' => 'ghi', 'Gohir.A09G023600' => 'ghi', 'Gohir.A09G023700' => 'ghi', 'Gohir.A09G023900' => 'ghi', 'Gohir.A09G024000' => 'ghi', 'Gohir.A11G068400' => 'ghi', 'Gohir.A12G057900' => 'ghi', 'Gohir.D02G167400' => 'ghi', 'Gohir.D04G052000' => 'ghi', 'Gohir.D09G022900' => 'ghi', 'Gohir.D09G023000' => 'ghi', 'Gohir.D09G023100' => 'ghi', 'Gohir.D09G023200' => 'ghi', 'Gohir.D10G063700' => 'ghi', 'Gohir.D10G063750' => 'ghi', 'Gohir.D11G072600' => 'ghi', 'Gohir.D12G057700' => 'ghi', 'Gorai.005G187800' => 'gra', 'Gorai.006G026900' => 'gra', 'Gorai.006G027000' => 'gra', 'Gorai.006G027100' => 'gra', 'Gorai.006G027200' => 'gra', 'Gorai.006G027300' => 'gra', 'Gorai.007G077800' => 'gra', 'Gorai.008G060800' => 'gra', 'Gorai.011G067600' => 'gra', 'Gorai.012G058200' => 'gra', 'GSVIVG01007839001' => 'vvi', 'GSVIVG01020136001' => 'vvi', 'GSVIVG01032579001' => 'vvi', 'HanXRQChr03g0086161' => 'han', 'HanXRQChr06g0174361' => 'han', 'HanXRQChr09g0248271' => 'han', 'HanXRQChr09g0265741' => 'han', 'HanXRQChr11g0338301' => 'han', 'HanXRQChr12g0385641' => 'han', 'HanXRQChr13g0388761' => 'han', 'HanXRQChr14g0448871' => 'han', 'HanXRQChr15g0474281' => 'han', 'HanXRQChr15g0474291' => 'han', 'HanXRQChr15g0476041' => 'han', 'HanXRQChr17g0547241' => 'han', 'HanXRQChr17g0547261' => 'han', 'HanXRQChr17g0547271' => 'han', 'HanXRQChr17g0570321' => 'han', 'Haze_05530' => 'cav', 'Haze_11587' => 'cav', 'Haze_11617' => 'cav', 'Haze_12115' => 'cav', 'Haze_12662' => 'cav', 'Haze_12669' => 'cav', 'Haze_12673' => 'cav', 'Haze_14613' => 'cav', 'Hma1.2p1_0265F.1_g106320' => 'hma', 'Hma1.2p1_0289F.1_g114550' => 'hma', 'Hma1.2p1_0289F.1_g114560' => 'hma', 'Hma1.2p1_0375F.1_g138935' => 'hma', 'Hma1.2p1_0849F.1_g228070' => 'hma', 'HPP92_003790' => 'vpl', 'HPP92_004858' => 'vpl', 'Hund05933' => 'sun', 'Hund13749' => 'sun', 'Hund16094' => 'sun', 'Hund25301' => 'sun', 'Lalb_Chr02g0159881' => 'lal', 'Lalb_Chr02g0159891' => 'lal', 'Lalb_Chr02g0159901' => 'lal', 'Lalb_Chr05g0217341' => 'lal', 'Lalb_Chr05g0217351' => 'lal', 'Lalb_Chr05g0230101' => 'lal', 'Lalb_Chr05g0230111' => 'lal', 'Lalb_Chr05g0230121' => 'lal', 'Lalb_Chr06g0176551' => 'lal', 'Lalb_Chr07g0193051' => 'lal', 'Lalb_Chr07g0193061' => 'lal', 'Lalb_Chr07g0193071' => 'lal', 'Lalb_Chr07g0193081' => 'lal', 'Lalb_Chr07g0193091' => 'lal', 'Lalb_Chr16g0382591' => 'lal', 'Lalb_Chr16g0382601' => 'lal', 'Lalb_Chr21g0319171' => 'lal', 'Lj2g0007659' => 'lja', 'Lj2g0011859' => 'lja', 'Lj2g0021309' => 'lja', 'Lj3A1046T48' => 'lonja', 'Lj4g0011434' => 'lja', 'Lj5A120G52' => 'lonja', 'Lj6C798G9' => 'lonja', 'Lj7C406G4' => 'lonja', 'Lju41A28G115' => 'lonja', 'Lsat_1_v5_gn_0_31381' => 'lsa', 'Lsat_1_v5_gn_2_90740' => 'lsa', 'Lsat_1_v5_gn_3_107600' => 'lsa', 'Lsat_1_v5_gn_3_49260' => 'lsa', 'Lsat_1_v5_gn_4_180821' => 'lsa', 'Lsat_1_v5_gn_4_180841' => 'lsa', 'Lsat_1_v5_gn_4_7801' => 'lsa', 'Lsat_1_v5_gn_6_34441' => 'lsa', 'Lsat_1_v5_gn_8_161520' => 'lsa', 'Lsat_1_v5_gn_8_161620' => 'lsa', 'Manes.01G194400' => 'mes', 'Manes.03G145800' => 'mes', 'Manes.05G093400' => 'mes', 'Manes.17G117254' => 'mes', 'Mapoly0003s0144' => 'mpo', 'Mapoly0004s0221' => 'mpo', 'Mapoly0007s0276' => 'mpo', 'Mapoly0022s0016' => 'mpo', 'Mapoly0023s0176' => 'mpo', 'Mapoly0053s0001' => 'mpo', 'Mapoly0053s0004' => 'mpo', 'Mapoly0173s0028' => 'mpo', 'Mapoly0173s0029' => 'mpo', 'Mapoly0266s0002' => 'mpo', 'Mapoly0629s0001' => 'mpo', 'MBI05_g11252_MAGBIO' => 'mbi', 'MBI05_g34688_MAGBIO' => 'mbi', 'MBI06_g00792_MAGBIO' => 'mbi', 'MBI15_g13425_MAGBIO' => 'mbi', 'MBI15_g13429_MAGBIO' => 'mbi', 'MBI15_g13430_MAGBIO' => 'mbi', 'MBI15_g13432_MAGBIO' => 'mbi', 'MBI15_g14464_MAGBIO' => 'mbi', 'MBI15_g23242_MAGBIO' => 'mbi', 'MCO01G398' => 'mco', 'MCO01G416' => 'mco', 'MCO05G620' => 'mco', 'MD08G1247800' => 'mdo', 'MD09G1041300' => 'mdo', 'MD09G1041400' => 'mdo', 'MD13G1084700' => 'mdo', 'MD16G1083700' => 'mdo', 'MD17G1042600' => 'mdo', 'Medtr1g023820' => 'mtr', 'Medtr1g091047' => 'mtr', 'Medtr1g093310' => 'mtr', 'Medtr1g100260' => 'mtr', 'Medtr1g104937' => 'mtr', 'Medtr1g104940' => 'mtr', 'Medtr1g104960' => 'mtr', 'Medtr1g104980' => 'mtr', 'Medtr1g105010' => 'mtr', 'Medtr1g105955' => 'mtr', 'Medtr1g105960' => 'mtr', 'Medtr1g106560' => 'mtr', 'Medtr1g109550' => 'mtr', 'Medtr2g097830' => 'mtr', 'Medtr3g006000' => 'mtr', 'Medtr3g006065' => 'mtr', 'Medtr3g006105' => 'mtr', 'Medtr3g006125' => 'mtr', 'Medtr3g006150' => 'mtr', 'Medtr3g006185' => 'mtr', 'Medtr4g133300' => 'mtr', 'Medtr4g133470' => 'mtr', 'Medtr5g032270' => 'mtr', 'Medtr5g033280' => 'mtr', 'Medtr5g033370' => 'mtr', 'Medtr5g036670' => 'mtr', 'Medtr5g036790' => 'mtr', 'Medtr5g036820' => 'mtr', 'Medtr5g055670' => 'mtr', 'Medtr5g073430' => 'mtr', 'Medtr6g008970' => 'mtr', 'Medtr6g008995' => 'mtr', 'Medtr7g013380' => 'mtr', 'Medtr7g013410' => 'mtr', 'Medtr7g013525' => 'mtr', 'Medtr7g089490' => 'mtr', 'Medtr8g062350' => 'mtr', 'Medtr8g062700' => 'mtr', 'Medtr8g069945' => 'mtr', 'Medtr8g469180' => 'mtr', 'MELO3C002931.2' => 'cme', 'MELO3C012036.2' => 'cme', 'MELO3C033828.2' => 'cme', 'Migut.E00130' => 'egut', 'Migut.K01349' => 'egut', 'Migut.L01376' => 'egut', 'Migut.M00134' => 'egut', 'MSTRG.13390' => 'ama', 'MSTRG.23972' => 'ama', 'MSTRG.3203' => 'ama', 'MSTRG.7851' => 'ama', 'Nitab4.5_0001030g0110' => 'nta', 'Nitab4.5_0001727g0110' => 'nta', 'Nitab4.5_0003431g0040' => 'nta', 'Nitab4.5_0004905g0090' => 'nta', 'Nitab4.5_0004905g0100' => 'nta', 'Nitab4.5_0006969g0050' => 'nta', 'Nitab4.5_0007178g0010' => 'nta', 'Nitab4.5_0010004g0050' => 'nta', 'Nn3g17050' => 'nnu', 'Nn4g22953' => 'nnu', 'Oeu015869.1' => 'oeu', 'Oeu018533.1' => 'oeu', 'Oeu018662.3' => 'oeu', 'Oeu019836.1' => 'oeu', 'Oeu021412.1' => 'oeu', 'Oeu031505.3' => 'oeu', 'Oeu060594.1' => 'oeu', 'Oeu060596.1' => 'oeu', 'Oeu062378.1' => 'oeu', 'Os01g0109700' => 'osa', 'Os05g0100500' => 'osa', 'Os05g0588700' => 'osa', 'Peaxi162Scf00059g00016' => 'pax', 'Peaxi162Scf00129g00728' => 'pax', 'Peaxi162Scf00129g00740' => 'pax', 'Peaxi162Scf00765g00214' => 'pax', 'Peaxi162Scf00828g00015' => 'pax', 'PGR119G2050' => 'pgr', 'PGR119G2374' => 'pgr', 'PGR142G2133' => 'pgr', 'PGR142G2915' => 'pgr', 'PGSC0003DMG400001397' => 'stu', 'PGSC0003DMG400001398' => 'stu', 'PGSC0003DMG400001399' => 'stu', 'PGSC0003DMG400019571' => 'stu', 'PGSC0003DMG400022606' => 'stu', 'PGSC0003DMG400029221' => 'stu', 'PGSC0003DMG400034534' => 'stu', 'PGSC0003DMG400035076' => 'stu', 'PGSC0003DMG400038044' => 'stu', 'PGSC0003DMG400039730' => 'stu', 'PGSC0003DMG400047007' => 'stu', 'Phvul.002G077800' => 'pvu', 'Phvul.003G056400' => 'pvu', 'Phvul.003G056500' => 'pvu', 'Phvul.003G056501' => 'pvu', 'Phvul.004G022900' => 'pvu', 'Phvul.004G023000' => 'pvu', 'Potri.001G316300' => 'ptr', 'Potri.001G350200' => 'ptr', 'Potri.005G008200' => 'ptr', 'Potri.008G192200' => 'ptr', 'Potri.010G038700' => 'ptr', 'Potri.017G056201' => 'ptr', 'Pp3c24_13770' => 'ppa', 'Pp3c24_16180' => 'ppa', 'Pp3c24_19330' => 'ppa', 'Pp3c2_13890' => 'ppa', 'Pp3c2_13900' => 'ppa', 'Pp3c4_2640' => 'ppa', 'Pp3c8_14940' => 'ppa', 'Pp3c8_17710' => 'ppa', 'Pp3c8_19010' => 'ppa', 'PRCOL_00003383' => 'pco', 'PRCOL_00006654' => 'pco', 'Prupe.1G262300' => 'ppe', 'Prupe.3G276200' => 'ppe', 'Prupe.3G276300' => 'ppe', 'Psat0ss9382g0160' => 'psa', 'Psat1g078160' => 'psa', 'Psat2g085160' => 'psa', 'Psat2g112960' => 'psa', 'Psat2g113000' => 'psa', 'Psat2g113520' => 'psa', 'Psat2g113640' => 'psa', 'Psat2g113680' => 'psa', 'Psat2g114360' => 'psa', 'Psat2g114520' => 'psa', 'Psat2g115280' => 'psa', 'Psat4g067640' => 'psa', 'Psat5g006080' => 'psa', 'Psat6g209040' => 'psa', 'Psat6g209080' => 'psa', 'Psat6g210200' => 'psa', 'Psat6g222040' => 'psa', 'PSO063G7660' => 'pso', 'PSO161G0028' => 'pso', 'PSO210G1664' => 'pso', 'PSO210G2198' => 'pso', 'PSO339G1379' => 'pso', 'PSO384G1544' => 'pso', 'PSO478G4498' => 'pso', 'PSO541G4761' => 'pso', 'PSO591G0034' => 'pso', 'PSO832G3049' => 'pso', 'PSO832G3610' => 'pso', 'PSO832G3953' => 'pso', 'QL02p079008' => 'qlo', 'QL02p079019' => 'qlo', 'QL02p079032' => 'qlo', 'QL02p079036' => 'qlo', 'QL02p079049' => 'qlo', 'QL02p079058' => 'qlo', 'QL02p079084' => 'qlo', 'QL02p079111' => 'qlo', 'QL02p079125' => 'qlo', 'QL02p079147' => 'qlo', 'QL02p079149' => 'qlo', 'QL03p067436' => 'qlo', 'QL08p060408' => 'qlo', 'RcHm_v2.0_Chr0c44g0503731' => 'rch', 'RcHm_v2.0_Chr0c44g0503741' => 'rch', 'RcHm_v2.0_Chr2g0169911' => 'rch', 'RcHm_v2.0_Chr2g0169931' => 'rch', 'RcHm_v2.0_Chr2g0169991' => 'rch', 'RcHm_v2.0_Chr2g0170001' => 'rch', 'RcHm_v2.0_Chr4g0444901' => 'rch', 'RcHm_v2.0_Chr5g0002831' => 'rch', 'RcHm_v2.0_Chr5g0002841' => 'rch', 'RcHm_v2.0_Chr5g0019481' => 'rch', 'RcHm_v2.0_Chr5g0019491' => 'rch', 'RcHm_v2.0_Chr6g0269611' => 'rch', 'Rhsim06G0213700' => 'rsi', 'Rhsim08G0062900' => 'rsi', 'Rhsim08G0164700' => 'rsi', 'Rhsim12G0051100' => 'rsi', 'Rhsim12G0052100' => 'rsi', 'Rhsim12G0126800' => 'rsi', 'RhsimUnG0169000' => 'rsi', 'Sabra05G0007200' => 'sbr', 'Sabra05G0007400' => 'sbr', 'Sabra08G0145700' => 'sbr', 'Sabra16G0197100' => 'sbr', 'Sabra16G0199900' => 'sbr', 'Sabra16G0200000' => 'sbr', 'Sabra16G0229600' => 'sbr', 'Sabra17G0048200' => 'sbr', 'Sabra17G0049900' => 'sbr', 'SalBow1G0078' => 'sbo', 'SalBow1G7286' => 'sbo', 'SalBow2G0101' => 'sbo', 'SalBow2G1792' => 'sbo', 'SalBow2G2720' => 'sbo', 'SalBow8G2280' => 'sbo', 'Sc11g0001520' => 'sci', 'Sc11g0008010' => 'sci', 'Sc11g0008020' => 'sci', 'Sc14g0008500' => 'sci', 'Sed0004304' => 'sed', 'Sed0005847' => 'sed', 'Sed0005931' => 'sed', 'Sed0017791' => 'sed', 'Sed0025971' => 'sed', 'SEGI_00254' => 'sgi', 'SEGI_13294' => 'sgi', 'SEGI_18023' => 'sgi', 'SGA_v2.0_scaffold135G34805' => 'sas', 'SGA_v2.0_scaffold166G38313' => 'sas', 'SGA_v2.0_scaffold166G38317' => 'sas', 'SGA_v2.0_scaffold205G41733' => 'sas', 'SGA_v2.0_scaffold224G42970' => 'sas', 'SGA_v2.0_scaffold30G12504' => 'sas', 'SGA_v2.0_scaffold30G12513' => 'sas', 'SGA_v2.0_scaffold8G04282' => 'sas', 'SHI20999' => 'shi', 'SHI21000' => 'shi', 'SHI21001' => 'shi', 'SHI21003' => 'shi', 'SHI21007' => 'shi', 'SHI21008' => 'shi', 'SHI22235' => 'shi', 'SHI22236' => 'shi', 'SHI22238' => 'shi', 'SMO115G0316' => 'smo', 'SMO119G0353' => 'smo', 'SMO358G0732' => 'smo', 'Solyc02g067570.3' => 'sly', 'Solyc02g087360.4' => 'sly', 'Solyc02g087365.1' => 'sly', 'Solyc02g087370.1' => 'sly', 'Solyc02g087373.1' => 'sly', 'Solyc02g087377.1' => 'sly', 'Solyc02g087380.1' => 'sly', 'Solyc02g087390.3' => 'sly', 'Solyc04g024990.3' => 'sly', 'Solyc04g025000.2' => 'sly', 'Solyc05g006540.3' => 'sly', 'Solyc07g041320.3' => 'sly', 'Solyc10g047970.1' => 'sly', 'Solyc10g047980.3' => 'sly', 'Solyc10g047990.3' => 'sly', 'Solyc10g048000.3' => 'sly', 'Solyc11g045320.1' => 'sly', 'Solyc11g045332.1' => 'sly', 'Solyc11g045334.1' => 'sly', 'Solyc11g045336.1' => 'sly', 'Sopen02g016700' => 'spe', 'Sopen02g032110' => 'spe', 'Sopen02g032130' => 'spe', 'Sopen02g032140' => 'spe', 'Sopen04g011030' => 'spe', 'Sopen04g011300' => 'spe', 'Sopen05g002490' => 'spe', 'Sopen07g020650' => 'spe', 'Sopen07g020690' => 'spe', 'Sopen10g018960' => 'spe', 'Sopen10g018980' => 'spe', 'Sopen11g020780' => 'spe', 'Sp1g09080' => 'spa', 'Sp1g21550' => 'spa', 'Sp2g04710' => 'spa', 'Sp3g00760' => 'spa', 'Sp5g25130' => 'spa', 'Sp5g25140' => 'spa', 'Sp5g25150' => 'spa', 'Sp5g25160' => 'spa', 'Sp5g25170' => 'spa', 'Sp5g25180' => 'spa', 'Sp6g29020' => 'spa', 'TAR371G0714' => 'tar', 'TAR374G0802' => 'tar', 'TAR374G1381' => 'tar', 'TAR622G0057' => 'tar', 'TAR622G0385' => 'tar', 'TAR629G1864' => 'tar', 'THA.LOC104802413' => 'tha', 'THA.LOC104805422' => 'tha', 'THA.LOC104808829' => 'tha', 'THA.LOC104819649' => 'tha', 'THA.LOC104821055' => 'tha', 'THA.LOC104822068' => 'tha', 'THA.LOC104822375' => 'tha', 'THA.LOC104823669' => 'tha', 'Thecc.02G238600' => 'tca', 'Thecc.04G045900' => 'tca', 'Thecc.04G065500' => 'tca', 'Thhalv10005633m.g' => 'esa', 'Thhalv10006620m.g' => 'esa', 'Thhalv10009361m.g' => 'esa', 'Thhalv10009549m.g' => 'esa', 'Thhalv10009595m.g' => 'esa', 'Thhalv10012461m.g' => 'esa', 'Thhalv10018014m.g' => 'esa', 'Thhalv10019296m.g' => 'esa', 'Thhalv10019899m.g' => 'esa', 'Thhalv10023225m.g' => 'esa', 'TPR.G1157' => 'tpr', 'TPR.G12627' => 'tpr', 'TPR.G14714' => 'tpr', 'TPR.G14718' => 'tpr', 'TPR.G17336' => 'tpr', 'TPR.G21137' => 'tpr', 'TPR.G21142' => 'tpr', 'TPR.G26701' => 'tpr', 'TPR.G26710' => 'tpr', 'TPR.G26724' => 'tpr', 'TPR.G26744' => 'tpr', 'TPR.G27644' => 'tpr', 'TPR.G29738' => 'tpr', 'TPR.G30123' => 'tpr', 'TPR.G32588' => 'tpr', 'TPR.G36552' => 'tpr', 'TPR.G36553' => 'tpr', 'TPR.G39647' => 'tpr', 'TPR.G39648' => 'tpr', 'TPR.G540' => 'tpr', 'TPR.G5526' => 'tpr', 'TPR.G6893' => 'tpr', 'TPR.G9016' => 'tpr', 'TWI12G1163' => 'twi', 'TWI18G0523' => 'twi', 'TWI31G0818' => 'twi', 'TWI36G1084' => 'twi', 'TWI53G0540' => 'twi', 'TWI56G0743' => 'twi', 'TWI75G0044' => 'twi', 'unitig_21.g20509' => 'ugi', 'unitig_21.g20510' => 'ugi', 'unitig_22.g6485' => 'ugi', 'unitig_744.g24345' => 'ugi', 'unitig_746.g26577' => 'ugi', 'unitig_8.g2942' => 'ugi', 'vmacro01207' => 'vma', 'vmacro05138' => 'vma', 'vmacro05781' => 'vma', 'vmacro16299' => 'vma', 'vmacro18221' => 'vma', 'vmacro19347' => 'vma', 'vmacro23377' => 'vma', 'VMungo0251G0760' => 'vmu', 'VMungo0464G0344' => 'vmu', 'VMungo0464G1995' => 'vmu', 'VMungo1215G0505' => 'vmu', 'Zm00001eb126360' => 'zma', 'Zm00001eb135770' => 'zma', 'Zm00001eb135780' => 'zma', 'Zm00001eb135790' => 'zma', 'Zm00001eb267730' => 'zma', 'Zm00001eb334400' => 'zma', 'Zm00001eb334420' => 'zma', 'Zm00001eb414150' => 'zma' ) $gf_id = 'HOM05D000629' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000629' ) $data_identifier = 'HOM05D000629' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 11, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 29, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 25, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 38, 'bol' => (int) 24, 'bra' => (int) 18, 'can' => (int) 15, 'cansat' => (int) 2, 'chi' => (int) 16, 'cru' => (int) 23, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 24, 'fve' => (int) 10, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 3, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 17, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 11, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 40, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 17, 'pso' => (int) 12, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 20, 'spe' => (int) 12, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 3, 'esa' => (int) 10, 'tpr' => (int) 23, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1